DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Prior Pr_SD Pr_Like Afterbound
NatM_uniform_Fem_GP_1 0.1710520 2 0.01 0.50 0.17 OK 0.0120757 0 Log_Norm -1.86895 0.31 0.0553727 OK
L_at_Amax_Fem_GP_1 48.1900000 2 44.00 52.00 48.00 OK 0.2782070 0 No_prior NA NA NA OK
VonBert_K_Fem_GP_1 0.1935310 2 0.15 0.25 0.19 OK 0.0039770 0 No_prior NA NA NA OK
CV_young_Fem_GP_1 0.1102460 2 0.01 0.20 0.11 OK 0.0069748 0 No_prior NA NA NA OK
CV_old_Fem_GP_1 0.0372932 2 0.01 0.15 0.05 OK 0.0036680 0 No_prior NA NA NA OK
NatM_uniform_Mal_GP_1 0.2605890 2 -0.50 1.00 0.25 OK 0.0432259 0 No_prior NA NA NA OK
L_at_Amax_Mal_GP_1 -0.3374540 2 -0.80 0.00 -0.33 OK 0.0108637 0 No_prior NA NA NA OK
VonBert_K_Mal_GP_1 0.5492490 2 0.20 1.00 0.50 OK 0.0411219 0 No_prior NA NA NA OK
CV_young_Mal_GP_1 0.2082440 2 -1.00 1.00 0.00 OK 0.0791166 0 No_prior NA NA NA OK
CV_old_Mal_GP_1 0.1482890 2 -1.00 2.00 0.00 OK 0.1943380 0 No_prior NA NA NA OK
SR_LN(R0) 10.2476000 1 8.00 13.00 11.00 OK 0.2136240 0 No_prior NA NA NA OK
Q_extraSD_CalCOFI_Survey(11) 0.3131580 1 0.00 1.00 0.30 OK 0.0752310 0 No_prior NA NA NA OK
Q_extraSD_RREAS_YOY_Survey(12) 1.2334300 1 0.00 3.00 1.20 OK 0.2379460 0 No_prior NA NA NA OK
Size_DblN_peak_NoCA_HKL(1) 41.2474000 3 10.00 59.00 30.00 OK 2.2024600 0 No_prior NA NA NA OK
Size_DblN_ascend_se_NoCA_HKL(1) 4.4284700 3 0.01 12.00 3.00 OK 0.2953130 0 No_prior NA NA NA OK
Size_DblN_descend_se_NoCA_HKL(1) 5.0241300 3 0.01 12.00 5.00 OK 1.7425200 0 No_prior NA NA NA OK
Size_DblN_peak_SoCA_HKL(2) 24.2451000 3 8.50 59.50 30.00 OK 2.1317800 0 No_prior NA NA NA OK
Size_DblN_ascend_se_SoCA_HKL(2) 1.4103300 3 0.50 15.00 3.00 OK 1.7494100 0 No_prior NA NA NA OK
Size_DblN_descend_se_SoCA_HKL(2) 5.7814400 3 0.50 20.00 10.00 OK 0.6732980 0 No_prior NA NA NA OK
Size_DblN_peak_CA_TWL(3) 44.6731000 3 10.00 59.00 44.00 OK 1.1664000 0 No_prior NA NA NA OK
Size_DblN_ascend_se_CA_TWL(3) 4.5016500 3 0.01 12.00 4.00 OK 0.1636100 0 No_prior NA NA NA OK
Size_DblN_descend_se_CA_TWL(3) 2.9852800 3 0.01 20.00 3.00 OK 0.7915510 0 No_prior NA NA NA OK
Size_DblN_peak_OR_WA_Comm(4) 41.9250000 3 10.00 59.00 30.00 OK 5.5377400 0 No_prior NA NA NA OK
Size_DblN_ascend_se_OR_WA_Comm(4) 4.4756900 3 0.01 12.00 3.00 OK 0.8189010 0 No_prior NA NA NA OK
Size_DblN_peak_CA_NET(5) 45.8676000 3 10.00 59.00 30.00 OK 1.3821800 0 No_prior NA NA NA OK
Size_DblN_ascend_se_CA_NET(5) 4.3074400 3 0.01 12.00 3.00 OK 0.1986950 0 No_prior NA NA NA OK
Size_DblN_descend_se_CA_NET(5) 3.6321300 3 0.01 12.00 5.00 OK 1.3382200 0 No_prior NA NA NA OK
Size_DblN_peak_NoCA_OR_WA_Rec(6) 43.4907000 3 10.00 59.00 30.00 OK 1.8130800 0 No_prior NA NA NA OK
Size_DblN_ascend_se_NoCA_OR_WA_Rec(6) 5.0897400 3 0.01 12.00 3.00 OK 0.1878040 0 No_prior NA NA NA OK
Size_DblN_descend_se_NoCA_OR_WA_Rec(6) 4.3205300 3 0.01 12.00 5.00 OK 1.1641000 0 No_prior NA NA NA OK
Size_DblN_peak_SoCA_Rec(7) 24.6445000 3 8.50 50.00 30.00 OK 1.0065300 0 No_prior NA NA NA OK
Size_DblN_ascend_se_SoCA_Rec(7) 2.9126600 3 0.50 10.00 3.00 OK 0.3612530 0 No_prior NA NA NA OK
Size_DblN_descend_se_SoCA_Rec(7) 3.3650100 3 0.01 8.00 7.00 OK 0.6494910 0 No_prior NA NA NA OK
Size_DblN_end_logit_SoCA_Rec(7) -1.1080100 3 -12.00 12.00 -10.00 OK 0.3032680 0 No_prior NA NA NA OK
Size_DblN_peak_TWL_discard(8) 29.5467000 3 10.00 50.00 30.00 OK 1.5813500 0 No_prior NA NA NA OK
Size_DblN_ascend_se_TWL_discard(8) 4.1819900 3 0.50 8.00 3.00 OK 0.3752240 0 No_prior NA NA NA OK
Size_DblN_descend_se_TWL_discard(8) 3.2001200 3 0.01 8.00 5.00 OK 0.5943070 0 No_prior NA NA NA OK
Size_DblN_peak_NoCA_HKL(1)_BLK1repl_1875 50.2373000 3 10.00 59.50 30.00 OK 3.4896400 0 No_prior NA NA NA OK
Size_DblN_ascend_se_NoCA_HKL(1)_BLK1repl_1875 4.0504900 3 0.50 10.00 4.00 OK 0.5041810 0 No_prior NA NA NA OK
Size_DblN_peak_SoCA_HKL(2)_BLK2repl_1875 47.4103000 3 8.50 59.50 30.00 OK 3.4082900 0 No_prior NA NA NA OK
Size_DblN_ascend_se_SoCA_HKL(2)_BLK2repl_1875 4.7170800 3 0.50 15.00 4.00 OK 0.3809840 0 No_prior NA NA NA OK
Size_DblN_peak_CA_TWL(3)_BLK3repl_1875 33.5853000 3 10.00 59.00 33.00 OK 1.1883900 0 No_prior NA NA NA OK
Size_DblN_ascend_se_CA_TWL(3)_BLK3repl_1875 3.2343700 3 0.01 12.00 3.00 OK 0.3349350 0 No_prior NA NA NA OK
Size_DblN_peak_SoCA_Rec(7)_BLK2repl_1875 30.5808000 3 8.50 50.00 30.00 OK 1.9967700 0 No_prior NA NA NA OK
Size_DblN_ascend_se_SoCA_Rec(7)_BLK2repl_1875 3.7319300 3 0.50 10.00 4.00 OK 0.4544870 0 No_prior NA NA NA OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Size_DblN_ascend_se_CA_TWL(3)_BLK3repl_1875 Size_DblN_peak_CA_TWL(3)_BLK3repl_1875 0.962321
Size_DblN_ascend_se_NoCA_HKL(1) Size_DblN_peak_NoCA_HKL(1) 0.940508
Size_DblN_ascend_se_OR_WA_Comm(4) Size_DblN_peak_OR_WA_Comm(4) 0.937486
Size_DblN_ascend_se_SoCA_Rec(7)_BLK2repl_1875 Size_DblN_peak_SoCA_Rec(7)_BLK2repl_1875 0.925571
Size_DblN_ascend_se_SoCA_HKL(2)_BLK2repl_1875 Size_DblN_peak_SoCA_HKL(2)_BLK2repl_1875 0.912087
Size_DblN_ascend_se_SoCA_HKL(2) Size_DblN_peak_SoCA_HKL(2) 0.911915
Size_DblN_ascend_se_NoCA_HKL(1)_BLK1repl_1875 Size_DblN_peak_NoCA_HKL(1)_BLK1repl_1875 0.90656
SR_LN(R0) NatM_uniform_Fem_GP_1 0.895937
Size_DblN_descend_se_TWL_discard(8) Size_DblN_peak_TWL_discard(8) -0.879377
Size_DblN_ascend_se_SoCA_Rec(7) Size_DblN_peak_SoCA_Rec(7) 0.876084
VonBert_K_Fem_GP_1 L_at_Amax_Fem_GP_1 -0.873498
Size_DblN_ascend_se_CA_NET(5) Size_DblN_peak_CA_NET(5) 0.872881
Size_DblN_ascend_se_NoCA_OR_WA_Rec(6) Size_DblN_peak_NoCA_OR_WA_Rec(6) 0.867127
VonBert_K_Mal_GP_1 L_at_Amax_Mal_GP_1 -0.861727
Size_DblN_ascend_se_TWL_discard(8) Size_DblN_peak_TWL_discard(8) 0.831187
Size_DblN_ascend_se_CA_TWL(3) Size_DblN_peak_CA_TWL(3) 0.83067
CV_young_Mal_GP_1 CV_young_Fem_GP_1 -0.79581
Main_RecrDev_1984 SR_LN(R0) -0.742382
Size_DblN_descend_se_SoCA_Rec(7) Size_DblN_peak_SoCA_Rec(7) -0.738578
NatM_uniform_Mal_GP_1 NatM_uniform_Fem_GP_1 -0.722768
Size_DblN_descend_se_NoCA_HKL(1) Size_DblN_peak_NoCA_HKL(1) -0.699689
Size_DblN_descend_se_CA_TWL(3) Size_DblN_peak_CA_TWL(3) -0.694318
Size_DblN_descend_se_TWL_discard(8) Size_DblN_ascend_se_TWL_discard(8) -0.689193
CV_old_Mal_GP_1 L_at_Amax_Mal_GP_1 -0.665906
CV_young_Fem_GP_1 VonBert_K_Fem_GP_1 -0.653595
Size_DblN_descend_se_NoCA_HKL(1) Size_DblN_ascend_se_NoCA_HKL(1) -0.630748
CV_old_Fem_GP_1 CV_young_Fem_GP_1 -0.618786
SR_LN(R0) NatM_uniform_Mal_GP_1 -0.614109
Main_RecrDev_1971 Main_RecrDev_1970 -0.604926
CV_old_Mal_GP_1 VonBert_K_Mal_GP_1 0.604737
Size_DblN_descend_se_SoCA_Rec(7) Size_DblN_ascend_se_SoCA_Rec(7) -0.589169
Main_RecrDev_1970 Main_RecrDev_1969 -0.578668
Size_DblN_descend_se_NoCA_OR_WA_Rec(6) Size_DblN_peak_NoCA_OR_WA_Rec(6) -0.574484
CV_old_Fem_GP_1 VonBert_K_Fem_GP_1 0.572389
CV_old_Fem_GP_1 L_at_Amax_Fem_GP_1 -0.568216
Main_RecrDev_1984 NatM_uniform_Fem_GP_1 -0.547557
Main_RecrDev_1974 Main_RecrDev_1973 -0.545028
CV_young_Mal_GP_1 VonBert_K_Mal_GP_1 -0.535805
Size_DblN_descend_se_CA_TWL(3) Size_DblN_ascend_se_CA_TWL(3) -0.534947
CV_young_Fem_GP_1 L_at_Amax_Fem_GP_1 0.534745
CV_young_Mal_GP_1 VonBert_K_Fem_GP_1 0.526606
VonBert_K_Mal_GP_1 VonBert_K_Fem_GP_1 -0.504374
CV_old_Mal_GP_1 CV_young_Mal_GP_1 -0.503796
L_at_Amax_Mal_GP_1 L_at_Amax_Fem_GP_1 -0.499978
CV_old_Mal_GP_1 CV_old_Fem_GP_1 -0.495532
CV_young_Mal_GP_1 CV_old_Fem_GP_1 0.48495
L_at_Amax_Mal_GP_1 VonBert_K_Fem_GP_1 0.48325
Main_RecrDev_1973 Main_RecrDev_1972 -0.480383
Main_RecrDev_1975 Main_RecrDev_1974 -0.47154
Main_RecrDev_1979 SR_LN(R0) -0.465994

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Main_RecrDev_2000 0.0697418
Q_extraSD_RREAS_YOY_Survey(12) 0.123117
Main_RecrDev_2006 0.135375
Main_RecrDev_2024 0.140483
Main_RecrDev_2018 0.144085
Main_RecrDev_2005 0.161551
Q_extraSD_CalCOFI_Survey(11) 0.165782
Main_RecrDev_1983 0.168204
Main_RecrDev_1985 0.173445
Main_RecrDev_2023 0.184481
Main_RecrDev_1994 0.185293
Main_RecrDev_2014 0.189872
Main_RecrDev_1997 0.202793
Main_RecrDev_1998 0.202793
Main_RecrDev_1995 0.204472
Main_RecrDev_1996 0.204472
Main_RecrDev_2019 0.206783
Main_RecrDev_1993 0.212796
Main_RecrDev_1982 0.217487
Main_RecrDev_2002 0.219799
Main_RecrDev_2004 0.240571
Main_RecrDev_2017 0.24121
Main_RecrDev_2011 0.244446
Size_DblN_descend_se_CA_NET(5) 0.248026
Main_RecrDev_2016 0.254561
Main_RecrDev_1992 0.261978
Main_RecrDev_2007 0.268566
Main_RecrDev_1987 0.271305
Main_RecrDev_2022 0.271747
Size_DblN_end_logit_SoCA_Rec(7) 0.274809
Main_RecrDev_2020 0.283712
Main_RecrDev_1988 0.306953
Main_RecrDev_2021 0.312269
Main_RecrDev_1991 0.312615
Main_RecrDev_1989 0.315448
Main_RecrDev_1990 0.315448
Main_RecrDev_2012 0.321968
Main_RecrDev_2015 0.322949
Main_RecrDev_2001 0.330699
Main_RecrDev_1980 0.333518
Main_RecrDev_1981 0.333518
Main_RecrDev_2008 0.336547
Main_RecrDev_1986 0.357513
Main_RecrDev_2013 0.386904
Size_DblN_descend_se_SoCA_HKL(2) 0.38952
Main_RecrDev_2009 0.390953
Main_RecrDev_1977 0.402221
Main_RecrDev_1978 0.402221
Main_RecrDev_1968 0.407322
Main_RecrDev_2010 0.418594