DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Prior Pr_SD Pr_Like Afterbound
NatM_uniform_Fem_GP_1 0.0711184 3 0.010 0.11 0.0711206 OK 7.86200e-03 -0.00786556 Log_Norm -2.93857 0.438 0.2270580 OK
L_at_Amin_Fem_GP_1 25.2617000 2 22.000 35.00 25.2617000 OK 4.99693e-01 0.00213051 No_prior NA NA NA OK
L_at_Amax_Fem_GP_1 61.1301000 2 60.000 70.00 61.1301000 OK 6.66366e-01 0.00338883 No_prior NA NA NA OK
VonBert_K_Fem_GP_1 0.3668980 2 0.150 0.55 0.3668980 OK 1.73346e-02 0.00664446 No_prior NA NA NA OK
CV_young_Fem_GP_1 0.0580896 2 0.001 0.15 0.0580898 OK 8.62240e-03 -0.000441476 No_prior NA NA NA OK
CV_old_Fem_GP_1 0.1032940 2 0.010 0.30 0.1032940 OK 4.46180e-03 -0.0018828 No_prior NA NA NA OK
NatM_uniform_Mal_GP_1 0.0592370 3 0.010 0.11 0.0592384 OK 5.21340e-03 -0.00861999 Log_Norm -2.89857 0.438 0.0136467 OK
L_at_Amin_Mal_GP_1 26.6207000 2 15.000 35.00 26.6207000 OK 6.05265e-01 0.00456653 No_prior NA NA NA OK
L_at_Amax_Mal_GP_1 56.1106000 2 50.000 60.00 56.1106000 OK 3.79671e-01 0.00548119 No_prior NA NA NA OK
VonBert_K_Mal_GP_1 0.3807610 2 0.200 0.55 0.3807610 OK 1.69253e-02 0.00518793 No_prior NA NA NA OK
CV_young_Mal_GP_1 0.0704857 2 0.001 0.15 0.0704855 OK 7.75960e-03 0.000148419 No_prior NA NA NA OK
CV_old_Mal_GP_1 0.0780941 2 0.010 0.30 0.0780942 OK 3.32580e-03 -0.00102042 No_prior NA NA NA OK
SR_LN(R0) 9.8758000 1 8.000 12.00 9.8759100 OK 3.04634e-01 0.018794 No_prior NA NA NA OK
Q_base_ENV(3) 0.0602355 1 -15.000 15.00 0.0602353 OK 2.71236e-02 -0.00304373 No_prior NA NA NA OK
Q_extraSD_ENV(3) 0.9493050 2 0.100 1.30 0.9493090 OK 7.03779e-02 -0.000250881 No_prior NA NA NA OK
LnQ_base_AKSHLF(4) 0.2766850 1 -15.000 15.00 0.2765960 OK 2.77967e-01 0.00523771 No_prior NA NA NA OK
Q_extraSD_AKSHLF(4) 0.1701330 2 0.025 1.30 0.1701340 OK 6.70895e-02 -0.000224383 No_prior NA NA NA OK
Q_extraSD_AKSLP(5) 0.0326971 2 0.001 0.70 0.0326969 OK 3.81215e-02 -4.61531e-05 No_prior NA NA NA OK
Q_extraSD_NWSLP(6) 0.1637220 2 0.001 0.80 0.1637140 OK 8.29804e-02 0.000178743 No_prior NA NA NA OK
LnQ_base_AKSHLF(4)_BLK1repl_1995 -0.1595110 2 -15.000 15.00 -0.1595880 OK 2.87156e-01 0.0042515 No_prior NA NA NA OK
Age_DblN_ascend_se_FIX(1) 0.1579230 4 -15.000 10.00 0.1579390 OK 7.34989e-01 -0.00106893 No_prior NA NA NA OK
Age_DblN_descend_se_FIX(1) 2.7352100 4 -10.000 10.00 2.7351800 OK 3.63405e-01 0.00074158 No_prior NA NA NA OK
AgeSel_1MaleatZero_FIX 0.0567192 4 -15.000 15.00 0.0567194 OK 5.80939e+04 3.95977e-10 No_prior NA NA NA OK
AgeSel_1MaleatDogleg_FIX -0.8811630 4 -15.000 15.00 -0.8811620 OK 1.19246e-01 -0.000955303 No_prior NA NA NA OK
AgeSel_1MaleatMaxage_FIX -1.0937900 4 -15.000 15.00 -1.0937900 OK 4.88561e-01 0.000414241 No_prior NA NA NA OK
Age_DblN_ascend_se_TWL(2) -2.4241400 4 -20.000 10.00 -2.4240600 OK 4.42194e+03 1.33009e-07 No_prior NA NA NA OK
Age_DblN_end_logit_TWL(2) -1.4954700 4 -5.000 5.00 -1.4954800 OK 1.69148e-01 0.00601821 No_prior NA NA NA OK
Age_DblN_ascend_se_AKSHLF(4) -9.7289700 4 -10.000 10.00 -9.7290300 OK 1.69089e+03 -6.60889e-07 No_prior NA NA NA OK
Age_DblN_descend_se_AKSHLF(4) -1.0185300 4 -10.000 10.00 -1.0185300 OK 4.10397e-01 2.26064e-05 No_prior NA NA NA OK
Age_DblN_end_logit_AKSHLF(4) -3.7817800 4 -10.000 5.00 -3.7817800 OK 4.95953e-01 0.000371387 No_prior NA NA NA OK
AgeSel_4MaleatZero_AKSHLF -0.5441440 4 -15.000 15.00 -0.5441460 OK 5.80183e+04 -3.80134e-09 No_prior NA NA NA OK
AgeSel_4MaleatDogleg_AKSHLF -0.1768900 4 -15.000 15.00 -0.1768960 OK 1.26947e-01 0.00186152 No_prior NA NA NA OK
AgeSel_4MaleatMaxage_AKSHLF -5.9995600 4 -15.000 15.00 -5.9994400 OK 2.40799e+00 -0.000157385 No_prior NA NA NA OK
Age_DblN_peak_AKSLP(5) 1.4390100 4 1.000 12.00 1.4389900 OK 5.43816e-01 0.000129438 No_prior NA NA NA OK
Age_DblN_descend_se_AKSLP(5) -5.9641200 4 -20.000 10.00 -5.9641200 OK 5.78547e+04 -6.74475e-09 No_prior NA NA NA OK
Age_DblN_end_logit_AKSLP(5) -0.5574410 4 -5.000 5.00 -0.5574590 OK 3.94577e-01 0.000342933 No_prior NA NA NA OK
Age_DblN_peak_NWSLP(6) 3.5779500 4 1.000 12.00 3.5784800 OK 1.23248e+00 -0.000766637 No_prior NA NA NA OK
Age_DblN_ascend_se_NWSLP(6) 1.4529600 4 -10.000 10.00 1.4534400 OK 1.23101e+00 -0.000296704 No_prior NA NA NA OK
Age_DblN_descend_se_NWSLP(6) -14.4795000 4 -20.000 50.00 -14.4795000 OK 6.01686e+04 -7.01244e-08 No_prior NA NA NA OK
Age_DblN_end_logit_NWSLP(6) 0.2672090 4 -5.000 5.00 0.2670180 OK 6.60018e-01 0.000243733 No_prior NA NA NA OK
Age_DblN_peak_NWCBO(7) 0.1073990 4 0.010 5.00 0.1073990 OK 3.22323e-02 -0.000137477 No_prior NA NA NA OK
Age_DblN_ascend_se_NWCBO(7) -8.4465300 4 -20.000 10.00 -8.4465400 OK 5.50277e+04 -2.47227e-08 No_prior NA NA NA OK
Age_DblN_descend_se_NWCBO(7) 3.3516000 4 -10.000 10.00 3.3516000 OK 1.79783e-01 -0.00339299 No_prior NA NA NA OK
Retain_L_infl_FIX(1)_BLK2repl_1997 39.3408000 5 25.000 60.00 39.3408000 OK 2.29785e+00 -8.6775e-05 No_prior NA NA NA OK
Retain_L_infl_FIX(1)_BLK2repl_2011 40.9228000 5 25.000 60.00 40.9228000 OK 7.80702e-01 -5.61611e-05 No_prior NA NA NA OK
Retain_L_asymptote_logit_FIX(1)_BLK2repl_1997 2.4628700 5 -10.000 10.00 2.4628700 OK 3.13311e-01 0.000136703 No_prior NA NA NA OK
Retain_L_asymptote_logit_FIX(1)_BLK2repl_2019 1.8515400 5 -10.000 10.00 1.8515400 OK 1.20316e-01 3.91075e-05 No_prior NA NA NA OK
Retain_L_infl_TWL(2)_BLK3repl_1982 47.3908000 5 15.000 55.00 47.3908000 OK 5.08143e-01 -0.00225751 No_prior NA NA NA OK
Retain_L_infl_TWL(2)_BLK3repl_2011 33.3921000 5 15.000 55.00 33.3921000 OK 2.38182e-01 -0.0289818 No_prior NA NA NA OK
Retain_L_infl_TWL(2)_BLK3repl_2019 42.4739000 5 15.000 55.00 42.4739000 OK 6.21407e-01 -0.033708 No_prior NA NA NA OK
Retain_L_asymptote_logit_TWL(2)_BLK3repl_1982 3.7500900 5 -10.000 10.00 3.7500800 OK 4.36345e-01 0.00185082 No_prior NA NA NA OK
Retain_L_asymptote_logit_TWL(2)_BLK3repl_2019 6.0386600 5 -10.000 10.00 6.0385900 OK 3.34180e+00 0.00244232 No_prior NA NA NA OK
Age_DblN_peak_FIX(1)_BLK4repl_1997 3.1962200 4 2.000 20.00 3.1962200 OK 3.48549e-01 0.000240376 No_prior NA NA NA OK
Age_DblN_peak_FIX(1)_BLK4repl_2003 4.9784500 4 2.000 20.00 4.9784500 OK 9.80666e-01 0.000485998 No_prior NA NA NA OK
Age_DblN_peak_FIX(1)_BLK4repl_2011 3.0642300 4 2.000 20.00 3.0642300 OK 2.13362e-02 0.00272339 No_prior NA NA NA OK
Age_DblN_ascend_se_FIX(1)_BLK4repl_2003 1.8163300 4 -10.000 20.00 1.8163400 OK 7.70511e-01 -0.00142684 No_prior NA NA NA OK
Age_DblN_ascend_se_FIX(1)_BLK4repl_2011 -8.4465200 4 -10.000 20.00 -8.4462500 OK 1.68504e+03 -1.76341e-08 No_prior NA NA NA OK
Age_DblN_descend_se_TWL(2)_BLK5repl_1982 2.0397200 4 -10.000 10.00 2.0397500 OK 4.61788e-01 0.000758506 No_prior NA NA NA OK
Age_DblN_descend_se_TWL(2)_BLK5repl_2003 6.8007800 4 -10.000 10.00 6.8007800 OK 4.30934e-01 0.000616374 No_prior NA NA NA OK
Age_DblN_descend_se_AKSHLF(4)_BLK6repl_1995 3.1852000 4 -10.000 10.00 3.1851800 OK 1.84516e-01 0.00244411 No_prior NA NA NA OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Age_DblN_ascend_se_FIX(1)_BLK4repl_2003 Age_DblN_peak_FIX(1)_BLK4repl_2003 0.958706
Age_DblN_ascend_se_NWSLP(6) Age_DblN_peak_NWSLP(6) 0.93643
Retain_L_asymptote_logit_FIX(1)_BLK2repl_1997 Retain_L_infl_FIX(1)_BLK2repl_1997 0.932728
SR_LN(R0) NatM_uniform_Fem_GP_1 0.913268
NatM_uniform_Mal_GP_1 NatM_uniform_Fem_GP_1 0.905447
Retain_L_asymptote_logit_TWL(2)_BLK3repl_2019 Retain_L_infl_TWL(2)_BLK3repl_2019 0.89714
AgeSel_4MaleatMaxage_AKSHLF AgeSel_4MaleatDogleg_AKSHLF -0.874814
VonBert_K_Fem_GP_1 L_at_Amax_Fem_GP_1 -0.866992
SR_LN(R0) NatM_uniform_Mal_GP_1 0.851169
Main_RecrDev_2016 Main_RecrDev_2013 0.84722
LnQ_base_AKSHLF(4)_BLK1repl_1995 SR_LN(R0) -0.811346
Retain_L_asymptote_logit_TWL(2)_BLK3repl_1982 Retain_L_infl_TWL(2)_BLK3repl_1982 0.784596
VonBert_K_Mal_GP_1 L_at_Amax_Mal_GP_1 -0.761664
LnQ_base_AKSHLF(4)_BLK1repl_1995 NatM_uniform_Fem_GP_1 -0.760367
LnQ_base_AKSHLF(4) SR_LN(R0) -0.754834
Main_RecrDev_2008 Main_RecrDev_2000 0.740299
VonBert_K_Mal_GP_1 L_at_Amin_Mal_GP_1 -0.738179
Main_RecrDev_2013 Main_RecrDev_2008 0.735663
Main_RecrDev_2013 Main_RecrDev_2000 0.729051
LnQ_base_AKSHLF(4) NatM_uniform_Fem_GP_1 -0.726768
Main_RecrDev_2016 Main_RecrDev_2008 0.719154
Main_RecrDev_2016 Main_RecrDev_2000 0.717325
Main_RecrDev_1995 SR_LN(R0) -0.698052
Main_RecrDev_2015 Main_RecrDev_2013 0.686772
LnQ_base_AKSHLF(4)_BLK1repl_1995 LnQ_base_AKSHLF(4) 0.684625
LnQ_base_AKSHLF(4)_BLK1repl_1995 NatM_uniform_Mal_GP_1 -0.672736
Main_RecrDev_2016 Main_RecrDev_2015 0.671638
Main_RecrDev_2016 Main_RecrDev_2010 0.668238
LnQ_base_AKSHLF(4) NatM_uniform_Mal_GP_1 -0.658745
Main_RecrDev_1990 SR_LN(R0) -0.647686
Main_RecrDev_2013 Main_RecrDev_2010 0.644151
VonBert_K_Fem_GP_1 L_at_Amin_Fem_GP_1 -0.636382
Main_RecrDev_2000 Main_RecrDev_1995 0.634773
Main_RecrDev_2000 SR_LN(R0) -0.625854
Main_RecrDev_2015 Main_RecrDev_2008 0.623343
Main_RecrDev_2015 Main_RecrDev_2000 0.619343
Main_RecrDev_1995 NatM_uniform_Mal_GP_1 -0.611714
Main_RecrDev_2008 Main_RecrDev_1995 0.607084
Main_RecrDev_1995 NatM_uniform_Fem_GP_1 -0.605179
Main_RecrDev_2000 NatM_uniform_Mal_GP_1 -0.603034
Main_RecrDev_2013 Main_RecrDev_1995 0.597678
Main_RecrDev_2016 Main_RecrDev_1995 0.586822
Main_RecrDev_1980 Main_RecrDev_1979 -0.577771
Main_RecrDev_2008 SR_LN(R0) -0.572495
Main_RecrDev_2010 Main_RecrDev_2000 0.566672
Main_RecrDev_2000 NatM_uniform_Fem_GP_1 -0.554697
CV_old_Mal_GP_1 CV_young_Mal_GP_1 -0.554334
Main_RecrDev_2008 NatM_uniform_Mal_GP_1 -0.553579
Main_RecrDev_2013 NatM_uniform_Mal_GP_1 -0.55294
Main_RecrDev_2013 SR_LN(R0) -0.552002

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
AgeSel_1MaleatZero_FIX 0
Age_DblN_ascend_se_AKSHLF(4) 0
AgeSel_4MaleatZero_AKSHLF 0
Age_DblN_descend_se_NWSLP(6) 0
Age_DblN_ascend_se_NWCBO(7) 0
Age_DblN_descend_se_AKSLP(5) 9.34644e-14
Age_DblN_ascend_se_TWL(2) 1.48876e-05
Age_DblN_ascend_se_FIX(1)_BLK4repl_2011 0.00203854
Early_InitAge_30 0.00757438
Early_InitAge_29 0.00799724
Early_InitAge_28 0.00844226
Early_InitAge_27 0.00891034
Early_InitAge_26 0.00940256
Early_InitAge_25 0.00992003
Early_InitAge_24 0.0104636
Early_InitAge_23 0.0110346
Early_InitAge_22 0.011634
Early_InitAge_21 0.0122628
Early_InitAge_20 0.0129222
Early_InitAge_19 0.0136132
Early_InitAge_18 0.0143369
Early_InitAge_17 0.0150944
Early_InitAge_16 0.0158863
Early_InitAge_15 0.0167139
Early_InitAge_14 0.0175776
Early_InitAge_13 0.0184781
Early_InitAge_12 0.0194156
Early_InitAge_11 0.0203897
Retain_L_asymptote_logit_FIX(1)_BLK2repl_2019 0.0213435
Early_InitAge_10 0.0214
Early_InitAge_9 0.0224445
Early_InitAge_8 0.0235204
Early_InitAge_7 0.024623
Early_InitAge_6 0.0257454
Early_InitAge_5 0.0268782
Early_InitAge_4 0.0280121
Early_InitAge_3 0.0291513
Early_InitAge_2 0.030315
Early_InitAge_1 0.031512
Early_RecrDev_1890 0.0324866
Early_RecrDev_1891 0.0337231
Early_RecrDev_1892 0.03499
Early_RecrDev_1893 0.036286
Early_RecrDev_1894 0.0376096
Early_RecrDev_1895 0.0389594
Early_RecrDev_1896 0.0403344
Early_RecrDev_1897 0.0417349
Early_RecrDev_1898 0.04316
Early_RecrDev_1899 0.0446091
Early_RecrDev_1900 0.0460819