DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Afterbound
L_at_Amin_Fem_GP_1 9.7288400 2 1.00 26.8976 13.1942000 OK 0.3185850 -3.57134e-05 No_prior OK
L_at_Amax_Fem_GP_1 33.7372000 4 1.00 83.6400 38.9730000 OK 0.2947490 -0.000123162 No_prior OK
VonBert_K_Fem_GP_1 0.2471350 4 0.05 0.7760 0.1736320 OK 0.0106031 9.24524e-06 No_prior OK
CV_young_Fem_GP_1 0.2000000 3 0.05 0.2000 0.1000000 HI 0.0000134 -7.86439e-05 No_prior CHECK
CV_old_Fem_GP_1 0.0878053 3 0.05 0.2000 0.1000000 OK 0.0045946 0.000325802 No_prior OK
L_at_Amin_Mal_GP_1 13.5970000 2 1.00 26.8976 13.5585000 OK 0.3853500 9.49461e-05 No_prior OK
L_at_Amax_Mal_GP_1 32.1094000 4 1.00 83.6400 34.6793000 OK 0.3735330 2.94137e-05 No_prior OK
VonBert_K_Mal_GP_1 0.2229360 4 0.05 0.7760 0.1758920 OK 0.0144990 -0.000189631 No_prior OK
CV_young_Mal_GP_1 0.1146260 3 0.05 0.2000 0.1000000 OK 0.0115268 -7.62215e-05 No_prior OK
CV_old_Mal_GP_1 0.0875222 3 0.05 0.2000 0.1000000 OK 0.0052784 -0.000181232 No_prior OK
SR_LN(R0) 11.1060000 1 1.00 31.0000 15.0000000 OK 0.0882148 3.42776e-05 No_prior OK
Q_extraSD_SURVEY1(3) 0.4327160 1 0.01 0.5000 0.1449390 OK 0.1770650 -6.9857e-06 No_prior OK
Q_extraSD_SURVEY2(4) 0.1594090 1 0.01 0.5000 0.0467721 OK 0.0863269 1.29888e-05 No_prior OK
Size_DblN_peak_FISHERY_current(1) 47.2899000 5 10.00 58.0000 29.0000000 OK 2.6203400 -3.66838e-05 No_prior OK
Size_DblN_ascend_se_FISHERY_current(1) 5.7656000 5 -5.00 10.0000 3.0000000 OK 0.1390000 -1.12907e-05 No_prior OK
Retain_L_infl_FISHERY_current(1) 26.8948000 3 5.00 70.0000 23.0000000 OK 0.2039530 -3.35399e-05 No_prior OK
Retain_L_width_FISHERY_current(1) 1.5388000 3 0.10 40.0000 2.0000000 OK 0.1400600 -1.90256e-05 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1) 2.4544200 3 -10.00 10.0000 1.5000000 OK 0.1800130 4.99011e-06 No_prior OK
SzSel_Male_Peak_FISHERY_current(1) -12.1779000 6 -20.00 20.0000 0.8583450 OK 1.6964700 -4.98829e-05 No_prior OK
SzSel_Male_Ascend_FISHERY_current(1) -2.2653900 4 -5.00 5.0000 0.0000000 OK 0.2489970 -5.54994e-05 No_prior OK
Size_DblN_peak_SURVEY1(3) 26.9254000 4 10.00 58.0000 24.0000000 OK 0.4323770 1.42279e-05 No_prior OK
Size_DblN_top_logit_SURVEY1(3) -3.9582800 5 -15.00 7.0000 3.0000000 OK 254.1220000 -5.68026e-08 No_prior OK
Size_DblN_ascend_se_SURVEY1(3) 3.0469700 4 -5.00 10.0000 3.0000000 OK 0.1233160 9.31314e-06 No_prior OK
Size_DblN_peak_SURVEY2(4) 26.1930000 4 10.00 58.0000 24.0000000 OK 0.8516160 -5.70782e-07 No_prior OK
Size_DblN_top_logit_SURVEY2(4) 4.0001600 5 -7.00 15.0000 3.0000000 OK 245.9640000 4.48117e-08 No_prior OK
Size_DblN_ascend_se_SURVEY2(4) 3.2978900 4 -5.00 10.0000 3.0000000 OK 0.2382960 0.000119919 No_prior OK
Size_DblN_peak_SURVEY3(5) 28.7970000 4 10.00 58.0000 24.0000000 OK 0.3713030 2.55896e-06 No_prior OK
Size_DblN_ascend_se_SURVEY3(5) 3.4929800 4 -5.00 10.0000 3.0000000 OK 0.0839292 8.97886e-06 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2011 2.7026500 3 -10.00 10.0000 1.5000000 OK 0.0760302 4.30115e-05 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2012 2.7895400 3 -10.00 10.0000 1.5000000 OK 0.0681581 1.46517e-05 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2013 9.8944300 3 -10.00 10.0000 1.5000000 HI 3.1779900 -7.34511e-08 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2014 3.0870800 3 -10.00 10.0000 1.5000000 OK 0.0968277 -2.50121e-05 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 2.1997500 3 -10.00 10.0000 1.5000000 OK 0.0583004 0.00013243 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 2.2929900 3 -10.00 10.0000 1.5000000 OK 0.0711614 -0.000223587 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 1.7688700 3 -10.00 10.0000 1.5000000 OK 0.0506228 0.000294779 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 1.9730800 3 -10.00 10.0000 1.5000000 OK 0.0593559 0.000178618 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 1.6972100 3 -10.00 10.0000 1.5000000 OK 0.0481877 -0.000213705 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 2.0326400 3 -10.00 10.0000 1.5000000 OK 0.0618125 -0.000140329 No_prior OK
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2021 1.3343300 3 -10.00 10.0000 1.5000000 OK 0.0381140 0.000115883 No_prior OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Size_DblN_ascend_se_FISHERY_current(1) Size_DblN_peak_FISHERY_current(1) 0.933045
Size_DblN_ascend_se_SURVEY2(4) Size_DblN_peak_SURVEY2(4) 0.919995
SzSel_Male_Peak_FISHERY_current(1) Size_DblN_ascend_se_FISHERY_current(1) -0.919505
Size_DblN_ascend_se_SURVEY1(3) Size_DblN_peak_SURVEY1(3) 0.906425
Size_DblN_ascend_se_SURVEY3(5) Size_DblN_peak_SURVEY3(5) 0.897667
VonBert_K_Mal_GP_1 L_at_Amax_Mal_GP_1 -0.893103
SzSel_Male_Peak_FISHERY_current(1) Size_DblN_peak_FISHERY_current(1) -0.86332
Retain_L_width_FISHERY_current(1) Retain_L_infl_FISHERY_current(1) -0.766878
VonBert_K_Fem_GP_1 L_at_Amax_Fem_GP_1 -0.752331
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 0.744356
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 0.73097
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 0.72835
VonBert_K_Mal_GP_1 L_at_Amin_Mal_GP_1 -0.726162
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 0.722498
CV_old_Mal_GP_1 L_at_Amax_Mal_GP_1 -0.695365
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2021 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 0.69411
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 0.683904
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 0.679271
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 0.667629
VonBert_K_Fem_GP_1 L_at_Amin_Fem_GP_1 -0.656385
Main_RecrDev_1985 Main_RecrDev_1984 -0.636893
CV_old_Fem_GP_1 L_at_Amax_Fem_GP_1 -0.634483
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 0.625511
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2012 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2011 0.593967
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 0.593861
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2014 0.590924
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2021 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 0.572833
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 0.571461
CV_old_Mal_GP_1 CV_young_Mal_GP_1 -0.560007
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 0.550675
CV_old_Mal_GP_1 VonBert_K_Mal_GP_1 0.546173
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 0.545942
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2014 0.536454
Main_RecrDev_1982 Main_RecrDev_1981 -0.514453
L_at_Amax_Mal_GP_1 L_at_Amin_Mal_GP_1 0.511154
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2016 0.506297
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2021 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2018 0.505991
Main_RecrDev_1988 Main_RecrDev_1987 -0.505535
Main_RecrDev_1990 Main_RecrDev_1989 -0.491371
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2019 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 0.459837
Main_RecrDev_1981 Main_RecrDev_1980 -0.455508
Main_RecrDev_1984 Main_RecrDev_1983 -0.445078
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2014 0.442272
Main_RecrDev_2019 Main_RecrDev_2018 -0.437319
Size_DblN_ascend_se_SURVEY1(3) Main_RecrDev_1990 -0.435138
Main_RecrDev_1989 Main_RecrDev_1988 -0.432077
Size_DblN_peak_SURVEY1(3) Main_RecrDev_1989 0.431867
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2021 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2017 0.425422
Main_RecrDev_2018 Main_RecrDev_2017 -0.422617
Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2020 Retain_L_asymptote_logit_FISHERY_current(1)_BLK1repl_2015 0.419425

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Late_RecrDev_2022 0
Size_DblN_top_logit_SURVEY2(4) 5.51586e-09
Early_RecrDev_1900 0.00014249
Early_RecrDev_1901 0.000162971
Early_RecrDev_1902 0.000186379
Early_RecrDev_1903 0.000213124
Early_RecrDev_1904 0.000243656
Early_RecrDev_1905 0.000278484
Early_RecrDev_1906 0.000318164
Early_RecrDev_1907 0.000363308
Early_RecrDev_1908 0.000414593
Early_RecrDev_1909 0.000472779
CV_young_Fem_GP_1 0.000528473
Early_RecrDev_1910 0.000538758
Early_RecrDev_1911 0.000613611
Early_RecrDev_1912 0.00069868
Early_RecrDev_1913 0.000795548
Early_RecrDev_1914 0.000905921
Early_RecrDev_1915 0.00103145
Early_RecrDev_1916 0.0011738
Size_DblN_top_logit_SURVEY1(3) 0.00122946
Early_RecrDev_1917 0.00133357
Early_RecrDev_1918 0.00151338
Early_RecrDev_1919 0.00171682
Early_RecrDev_1920 0.00194719
Early_RecrDev_1921 0.00220823
Early_RecrDev_1922 0.00250295
Early_RecrDev_1923 0.00283503
Early_RecrDev_1924 0.00321021
Early_RecrDev_1925 0.00363341
Early_RecrDev_1926 0.00411232
Early_RecrDev_1927 0.00465481
Early_RecrDev_1928 0.00526787
Early_RecrDev_1929 0.00596199
Early_RecrDev_1930 0.00674541
Early_RecrDev_1931 0.0076316
Early_RecrDev_1932 0.00862456
Early_RecrDev_1933 0.00975259
Early_RecrDev_1934 0.0110259
Early_RecrDev_1935 0.0124554
Early_RecrDev_1936 0.0140665
Early_RecrDev_1937 0.0158832
Early_RecrDev_1938 0.0179235
Early_RecrDev_1939 0.0201978
Early_RecrDev_1940 0.0227196
Early_RecrDev_1941 0.0255181
Early_RecrDev_1942 0.0286246
Early_RecrDev_1943 0.0320435
Late_RecrDev_2021 0.0326101
Early_RecrDev_1944 0.0357116