DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Prior Pr_SD Pr_Like Afterbound
SR_LN(R0) 9.4398800 4 7.00 13.0 9.330000 OK 0.0916764 -0.000118646 No_prior NA NA NA OK
Q_extraSD_Triennial1(4) 0.0866586 4 0.01 0.5 0.050000 OK 0.0614870 1.32141e-07 No_prior NA NA NA OK
Size_DblN_peak_Trawl_N(1) 25.3210000 1 10.00 60.0 30.000000 OK 1.7039100 -6.82769e-05 No_prior NA NA NA OK
Size_DblN_ascend_se_Trawl_N(1) 4.2979800 3 -5.00 10.0 3.000000 OK 0.2345740 6.76756e-05 No_prior NA NA NA OK
Size_DblN_descend_se_Trawl_N(1) 6.8307700 4 -5.00 10.0 5.000000 OK 0.1981330 -6.77527e-05 No_prior NA NA NA OK
Retain_L_infl_Trawl_N(1) 34.8080000 3 5.00 70.0 16.000000 OK 2.7751200 0.000102781 No_prior NA NA NA OK
Retain_L_width_Trawl_N(1) 2.2890400 3 0.10 40.0 10.000000 OK 0.2921460 2.26156e-05 No_prior NA NA NA OK
Retain_L_asymptote_logit_Trawl_N(1) 10.0000000 3 -10.00 10.0 1.000000 HI 0.0165381 -1.96228e-09 No_prior NA NA NA CHECK
Size_DblN_peak_Trawl_S(2) 20.0179000 1 10.00 60.0 28.000000 OK 2.7329800 -6.26429e-05 No_prior NA NA NA OK
Size_DblN_top_logit_Trawl_S(2) -0.6019960 3 -7.00 7.0 0.000000 OK 0.1951050 -0.000133092 No_prior NA NA NA OK
Size_DblN_ascend_se_Trawl_S(2) 4.0047700 3 -5.00 10.0 3.000000 OK 0.1661030 5.12633e-05 No_prior NA NA NA OK
Size_DblN_descend_se_Trawl_S(2) 5.2208800 4 -5.00 10.0 5.000000 OK 0.3574640 -5.7789e-05 No_prior NA NA NA OK
Retain_L_infl_Trawl_S(2) 28.6998000 3 5.00 70.0 24.000000 OK 0.9137760 0.00013041 No_prior NA NA NA OK
Retain_L_width_Trawl_S(2) 2.1096100 3 0.10 40.0 11.000000 OK 0.1964630 1.91096e-05 No_prior NA NA NA OK
Retain_L_asymptote_logit_Trawl_S(2) 10.0000000 3 -10.00 10.0 4.000000 HI 0.0125766 -4.6445e-08 No_prior NA NA NA CHECK
Size_DblN_peak_Non-trawl(3) 44.8554000 2 10.00 60.0 30.000000 OK 2.5414700 -3.4917e-06 No_prior NA NA NA OK
Size_DblN_top_logit_Non-trawl(3) -3.3001600 3 -7.00 7.0 0.000000 OK 2.9550700 -9.35523e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_Non-trawl(3) 5.0106300 3 -5.00 10.0 3.000000 OK 0.2584410 3.91152e-06 No_prior NA NA NA OK
Size_DblN_descend_se_Non-trawl(3) 4.6360400 4 -5.00 10.0 5.000000 OK 0.5229730 -2.12779e-06 No_prior NA NA NA OK
Retain_L_infl_Non-trawl(3) 25.4880000 3 5.00 70.0 11.000000 OK 1.4658600 -1.05329e-06 No_prior NA NA NA OK
Retain_L_width_Non-trawl(3) 2.9771900 3 0.10 40.0 10.000000 OK 1.7588900 -2.95757e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Non-trawl(3) 1.5139700 3 -10.00 10.0 1.000000 OK 0.1423570 1.26324e-06 No_prior NA NA NA OK
Size_DblN_peak_Triennial1(4) 26.7371000 2 10.00 60.0 30.000000 OK 1.8621800 -2.21075e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_Triennial1(4) 4.1095800 3 -5.00 10.0 3.000000 OK 0.4296730 1.77117e-06 No_prior NA NA NA OK
Size_DblN_descend_se_Triennial1(4) 3.1637200 4 -5.00 10.0 6.000000 OK 0.7286550 -5.21531e-07 No_prior NA NA NA OK
SzSel_Male_Peak_Triennial1(4) -1.9661900 3 -15.00 15.0 -3.000000 OK 1.9417700 -2.55786e-07 No_prior NA NA NA OK
SzSel_Male_Ascend_Triennial1(4) -0.1133280 3 -15.00 15.0 0.000000 OK 0.5136720 2.21652e-06 No_prior NA NA NA OK
Size_DblN_peak_Triennial2(5) 23.7004000 2 10.00 60.0 30.000000 OK 1.0710100 -4.67591e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_Triennial2(5) 4.3701400 3 -5.00 10.0 3.000000 OK 0.2292170 7.56902e-06 No_prior NA NA NA OK
Size_DblN_descend_se_Triennial2(5) 4.0834600 4 -5.00 10.0 5.000000 OK 0.2960750 9.01688e-07 No_prior NA NA NA OK
SzSel_Male_Peak_Triennial2(5) -1.9111400 3 -15.00 15.0 -2.857570 OK 1.0835400 -2.43007e-06 No_prior NA NA NA OK
SzSel_Male_Ascend_Triennial2(5) -0.3024540 3 -15.00 15.0 -0.150036 OK 0.2685120 1.34328e-05 No_prior NA NA NA OK
Size_DblN_peak_NWFSCcombo(6) 31.4279000 2 10.00 60.0 30.000000 OK 1.3985800 -6.15487e-06 No_prior NA NA NA OK
Size_DblN_top_logit_NWFSCcombo(6) -0.9013760 3 -7.00 7.0 0.000000 OK 0.2230290 -3.50983e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_NWFSCcombo(6) 4.9376900 3 -5.00 10.0 3.000000 OK 0.1820410 1.1921e-05 No_prior NA NA NA OK
Size_DblN_descend_se_NWFSCcombo(6) 4.4634300 4 -5.00 10.0 5.000000 OK 0.5434280 -9.14118e-07 No_prior NA NA NA OK
SzSel_Male_Peak_NWFSCcombo(6) -4.3047300 3 -15.00 15.0 -4.262840 OK 1.3817700 -2.78562e-06 No_prior NA NA NA OK
SzSel_Male_Ascend_NWFSCcombo(6) -0.5187780 3 -15.00 15.0 -0.347213 OK 0.2198190 1.86275e-05 No_prior NA NA NA OK
Size_DblN_peak_Trawl_N(1)_BLK3delta_2003 2.0183700 2 -15.00 15.0 0.000000 OK 1.2711200 -3.35456e-05 Normal 0 5.0 0.0814767 OK
Size_DblN_peak_Trawl_N(1)_BLK3delta_2011 1.4096700 2 -15.00 15.0 0.800000 OK 0.9771950 -3.71072e-05 Normal 0 5.0 0.0397436 OK
Retain_L_infl_Trawl_N(1)_BLK1delta_1989 -5.9890100 4 -10.00 10.0 -0.760000 OK 2.8108300 2.46499e-05 Normal 0 5.0 0.7173640 OK
Retain_L_infl_Trawl_N(1)_BLK1delta_2007 -5.0800500 4 -10.00 10.0 0.620000 OK 0.7932920 2.5598e-05 Normal 0 5.0 0.5161380 OK
Retain_L_infl_Trawl_N(1)_BLK1delta_2011 -1.3376000 4 -10.00 10.0 -0.450000 OK 0.7893260 2.83195e-05 Normal 0 5.0 0.0357837 OK
Retain_L_infl_Trawl_N(1)_BLK1delta_2015 -7.2102500 4 -10.00 10.0 0.000000 OK 0.5760500 1.51042e-06 Normal 0 5.0 1.0397500 OK
Retain_L_infl_Trawl_N(1)_BLK1delta_2020 6.3364100 4 -10.00 10.0 -0.650000 OK 0.5174540 -8.33633e-07 Normal 0 5.0 0.8030020 OK
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_1989 0.0005621 4 -0.50 0.5 -0.360000 OK 0.1999430 2.10567e-08 Normal 0 0.2 0.0000039 OK
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2007 0.0006698 4 -0.50 0.5 0.000000 OK 0.1999320 7.68213e-09 Normal 0 0.2 0.0000056 OK
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2011 0.0005757 4 -0.50 0.5 0.000000 OK 0.1999420 -1.10169e-08 Normal 0 0.2 0.0000041 OK
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2015 -0.0000345 4 -0.50 0.5 0.000000 OK 0.2000030 -4.36752e-09 Normal 0 0.2 0.0000000 OK
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2020 -0.0000685 4 -0.50 0.5 0.000000 OK 0.2000070 -4.19112e-09 Normal 0 0.2 0.0000001 OK
Size_DblN_peak_Trawl_S(2)_BLK3delta_2003 9.8182800 2 -15.00 15.0 0.000000 OK 2.4552500 -2.65428e-05 Normal 0 5.0 1.9279700 OK
Size_DblN_peak_Trawl_S(2)_BLK3delta_2011 0.1307900 2 -15.00 15.0 -1.000000 OK 0.6739720 -3.47036e-05 Normal 0 5.0 0.0003421 OK
Retain_L_infl_Trawl_S(2)_BLK2delta_1989 -2.1599500 4 -10.00 10.0 -0.700000 OK 0.9241100 3.93747e-05 Normal 0 5.0 0.0933080 OK
Retain_L_infl_Trawl_S(2)_BLK2delta_2007 -4.6270500 4 -10.00 10.0 0.000000 OK 0.8089060 3.48966e-05 Normal 0 5.0 0.4281910 OK
Retain_L_infl_Trawl_S(2)_BLK2delta_2011 -3.8181100 4 -10.00 10.0 -0.270000 OK 0.6021950 3.39618e-05 Normal 0 5.0 0.2915590 OK
Retain_L_infl_Trawl_S(2)_BLK2delta_2017 7.9020900 4 -10.00 10.0 0.000000 OK 0.4299980 2.21681e-05 Normal 0 5.0 1.2488600 OK
Retain_L_infl_Trawl_S(2)_BLK2delta_2020 -0.4405970 4 -10.00 10.0 -0.380000 OK 0.1764800 2.6724e-05 Normal 0 5.0 0.0038825 OK
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_1989 0.0007199 4 -0.50 0.5 -0.170000 OK 0.1999260 -6.71408e-08 Normal 0 0.2 0.0000065 OK
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2007 0.0010992 4 -0.50 0.5 0.000000 OK 0.1998880 -5.89495e-08 Normal 0 0.2 0.0000151 OK
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2011 0.0008178 4 -0.50 0.5 0.000000 OK 0.1999160 7.13045e-09 Normal 0 0.2 0.0000084 OK
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2017 -0.0002348 4 -0.50 0.5 0.000000 OK 0.2000230 -1.02911e-08 Normal 0 0.2 0.0000007 OK
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2020 -0.0000802 4 -0.50 0.5 0.000000 OK 0.2000080 1.22021e-07 Normal 0 0.2 0.0000001 OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Retain_L_infl_Trawl_N(1)_BLK1delta_1989 Retain_L_infl_Trawl_N(1) -0.975822
Size_DblN_ascend_se_Non-trawl(3) Size_DblN_peak_Non-trawl(3) 0.939723
Size_DblN_peak_Trawl_S(2)_BLK3delta_2003 Size_DblN_peak_Trawl_S(2) -0.934508
SzSel_Male_Ascend_NWFSCcombo(6) SzSel_Male_Peak_NWFSCcombo(6) 0.925297
Size_DblN_ascend_se_NWFSCcombo(6) Size_DblN_peak_NWFSCcombo(6) 0.917986
Retain_L_infl_Trawl_S(2)_BLK2delta_1989 Retain_L_infl_Trawl_S(2) -0.880809
Retain_L_infl_Trawl_N(1)_BLK1delta_2020 Retain_L_infl_Trawl_N(1)_BLK1delta_2015 -0.865521
Size_DblN_descend_se_NWFSCcombo(6) Size_DblN_top_logit_NWFSCcombo(6) -0.860783
Size_DblN_descend_se_Trawl_S(2) Size_DblN_top_logit_Trawl_S(2) -0.840783
Size_DblN_ascend_se_Triennial2(5) Size_DblN_peak_Triennial2(5) 0.826499
SzSel_Male_Ascend_Triennial2(5) SzSel_Male_Peak_Triennial2(5) 0.813182
SzSel_Male_Peak_NWFSCcombo(6) Size_DblN_ascend_se_NWFSCcombo(6) -0.801646
Size_DblN_ascend_se_Triennial1(4) Size_DblN_peak_Triennial1(4) 0.801058
SzSel_Male_Peak_NWFSCcombo(6) Size_DblN_peak_NWFSCcombo(6) -0.79104
SzSel_Male_Ascend_Triennial1(4) SzSel_Male_Peak_Triennial1(4) 0.77033
Retain_L_asymptote_logit_Non-trawl(3) Retain_L_width_Non-trawl(3) 0.761205
Size_DblN_top_logit_Non-trawl(3) Size_DblN_peak_Non-trawl(3) -0.760377
Retain_L_infl_Trawl_S(2)_BLK2delta_2017 Retain_L_width_Trawl_S(2) 0.752203
SzSel_Male_Ascend_NWFSCcombo(6) Size_DblN_ascend_se_NWFSCcombo(6) -0.749172
Retain_L_infl_Trawl_N(1)_BLK1delta_2015 Retain_L_width_Trawl_N(1) -0.725958
Retain_L_infl_Trawl_S(2)_BLK2delta_2011 Size_DblN_peak_Trawl_S(2)_BLK3delta_2011 0.725642
Size_DblN_descend_se_Non-trawl(3) Size_DblN_top_logit_Non-trawl(3) -0.704992
Retain_L_infl_Trawl_N(1)_BLK1delta_2020 Retain_L_width_Trawl_N(1) 0.684293
Retain_L_infl_Trawl_N(1)_BLK1delta_2011 Size_DblN_peak_Trawl_N(1)_BLK3delta_2011 0.681616
Size_DblN_ascend_se_Non-trawl(3) Size_DblN_top_logit_Non-trawl(3) -0.678612
SzSel_Male_Ascend_NWFSCcombo(6) Size_DblN_peak_NWFSCcombo(6) -0.651153
Size_DblN_descend_se_Triennial1(4) Size_DblN_peak_Triennial1(4) -0.637752
Size_DblN_peak_Trawl_N(1)_BLK3delta_2003 Size_DblN_peak_Trawl_N(1) -0.62112
SzSel_Male_Peak_Triennial2(5) Size_DblN_peak_Triennial2(5) -0.62018
SzSel_Male_Ascend_Triennial2(5) Size_DblN_ascend_se_Triennial2(5) -0.612144
Retain_L_infl_Trawl_S(2)_BLK2delta_2007 Retain_L_width_Trawl_S(2) -0.587321
Size_DblN_descend_se_Trawl_N(1) Size_DblN_peak_Trawl_N(1) -0.561142
SzSel_Male_Peak_Triennial2(5) Size_DblN_ascend_se_Triennial2(5) -0.556104
Size_DblN_descend_se_Triennial2(5) Size_DblN_peak_Triennial2(5) -0.551749
SzSel_Male_Ascend_Triennial1(4) Size_DblN_ascend_se_Triennial1(4) -0.550385
Retain_L_width_Non-trawl(3) Size_DblN_peak_Non-trawl(3) -0.519262
Main_RecrDev_2008 Main_RecrDev_2007 -0.514944
Retain_L_infl_Trawl_S(2)_BLK2delta_2017 Size_DblN_ascend_se_Trawl_S(2) 0.508403
Size_DblN_ascend_se_Trawl_N(1) Size_DblN_peak_Trawl_N(1) 0.508339
Retain_L_width_Non-trawl(3) Size_DblN_ascend_se_Non-trawl(3) -0.497685
SzSel_Male_Peak_Triennial1(4) Size_DblN_peak_Triennial1(4) -0.490458
Main_RecrDev_2003 Main_RecrDev_2002 -0.461392
Main_RecrDev_2004 Main_RecrDev_2003 -0.460085
Retain_L_infl_Trawl_N(1)_BLK1delta_2007 Retain_L_width_Trawl_N(1) -0.453971
Retain_L_width_Trawl_S(2) Retain_L_infl_Trawl_S(2) 0.448
SzSel_Male_Ascend_Triennial2(5) Size_DblN_peak_Triennial2(5) -0.443626
Size_DblN_peak_Trawl_S(2) SR_LN(R0) -0.437028
Size_DblN_descend_se_Triennial1(4) Size_DblN_ascend_se_Triennial1(4) -0.435923
SzSel_Male_Peak_Triennial1(4) Size_DblN_ascend_se_Triennial1(4) -0.433905
Retain_L_infl_Trawl_N(1)_BLK1delta_2020 Size_DblN_ascend_se_Trawl_N(1) 0.428013

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Late_RecrDev_2022 0
Retain_L_asymptote_logit_Trawl_N(1) 0.000305997
Retain_L_asymptote_logit_Trawl_S(2) 0.000321839
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2017 0.00111889
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2020 0.00115759
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2020 0.00235494
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_1989 0.0037072
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2007 0.00375883
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2011 0.00376809
Retain_L_asymptote_logit_Trawl_N(1)_BLK1delta_2015 0.00423886
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_1989 0.00511936
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2007 0.00523356
Retain_L_asymptote_logit_Trawl_S(2)_BLK2delta_2011 0.0053234
Late_RecrDev_2021 0.00640896
Late_RecrDev_2020 0.0121906
Early_InitAge_1 0.0153913
Late_RecrDev_2019 0.0181118
Main_RecrDev_1911 0.0302711
Main_RecrDev_1912 0.0303463
Main_RecrDev_1910 0.0305345
Main_RecrDev_1909 0.0306396
Main_RecrDev_1908 0.0306684
Main_RecrDev_1907 0.0306689
Main_RecrDev_1906 0.0307465
Main_RecrDev_1905 0.0307576
Main_RecrDev_1904 0.0308314
Main_RecrDev_1903 0.0309102
Main_RecrDev_1902 0.0310025
Main_RecrDev_1901 0.0312059
Main_RecrDev_1913 0.0315877
Main_RecrDev_1915 0.0319173
Main_RecrDev_1914 0.0324435
Main_RecrDev_1916 0.0326836
Main_RecrDev_1917 0.0334735
Main_RecrDev_1941 0.0335552
Main_RecrDev_1940 0.0346166
Main_RecrDev_1918 0.0351903
Main_RecrDev_1919 0.0376139
Main_RecrDev_1942 0.0390057
Main_RecrDev_1939 0.0401447
Main_RecrDev_1920 0.0402023
Main_RecrDev_1921 0.0428637
Main_RecrDev_1943 0.0443125
Main_RecrDev_1938 0.0450143
Main_RecrDev_1922 0.0453049
Main_RecrDev_2017 0.0463785
Main_RecrDev_2018 0.0473594
Main_RecrDev_1923 0.0478134
Main_RecrDev_1937 0.049178
Main_RecrDev_1944 0.0493189