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## Index

Index data for BottomTrawl. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_BottomTrawl.png

Fit to index data for BottomTrawl. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_BottomTrawl.png

Observed vs. expected index values with smoother for BottomTrawl
file: index3_obs_vs_exp_BottomTrawl.png

Log index data for BottomTrawl. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_BottomTrawl.png

Fit to log index data on log scale for BottomTrawl. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_BottomTrawl.png

log(observed) vs. log(expected) index values with smoother for BottomTrawl
file: index6_log_obs_vs_exp_BottomTrawl.png

Residuals of fit to index for BottomTrawl.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_BottomTrawl.png

Deviations for fit to index for BottomTrawl.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_BottomTrawl.png

Index data for Hake. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_Hake.png

Fit to index data for Hake. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_Hake.png

Observed vs. expected index values with smoother for Hake
file: index3_obs_vs_exp_Hake.png

Log index data for Hake. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_Hake.png

Fit to log index data on log scale for Hake. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_Hake.png

log(observed) vs. log(expected) index values with smoother for Hake
file: index6_log_obs_vs_exp_Hake.png

Timeseries of catchability for Hake
file: index7_timevarying_q_Hake.png

Catchability vs. vulnerable biomass for fleet Hake
This plot should illustrate curvature of nonlinear catchability relationship
or reveal patterns associated with random-walk catchability.
file: index8_q_vs_vuln_bio_Hake.png

Residuals of fit to index for Hake.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_Hake.png

Deviations for fit to index for Hake.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_Hake.png

Index data for JuvSurvey. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_JuvSurvey.png

Fit to index data for JuvSurvey. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_JuvSurvey.png

Observed vs. expected index values with smoother for JuvSurvey
file: index3_obs_vs_exp_JuvSurvey.png

Log index data for JuvSurvey. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_JuvSurvey.png

Fit to log index data on log scale for JuvSurvey. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_JuvSurvey.png

log(observed) vs. log(expected) index values with smoother for JuvSurvey
file: index6_log_obs_vs_exp_JuvSurvey.png

Residuals of fit to index for JuvSurvey.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_JuvSurvey.png

Deviations for fit to index for JuvSurvey.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_JuvSurvey.png

Index data for Triennial. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_Triennial.png

Fit to index data for Triennial. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_Triennial.png

Observed vs. expected index values with smoother for Triennial
file: index3_obs_vs_exp_Triennial.png

Log index data for Triennial. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_Triennial.png

Fit to log index data on log scale for Triennial. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_Triennial.png

log(observed) vs. log(expected) index values with smoother for Triennial
file: index6_log_obs_vs_exp_Triennial.png

Timeseries of catchability for Triennial
file: index7_timevarying_q_Triennial.png

Catchability vs. vulnerable biomass for fleet Triennial
This plot should illustrate curvature of nonlinear catchability relationship
or reveal patterns associated with random-walk catchability.
file: index8_q_vs_vuln_bio_Triennial.png

Residuals of fit to index for Triennial.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_Triennial.png

Deviations for fit to index for Triennial.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_Triennial.png

Index data for NWFSC. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_NWFSC.png

Fit to index data for NWFSC. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_NWFSC.png

Observed vs. expected index values with smoother for NWFSC
file: index3_obs_vs_exp_NWFSC.png

Log index data for NWFSC. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_NWFSC.png

Fit to log index data on log scale for NWFSC. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_NWFSC.png

log(observed) vs. log(expected) index values with smoother for NWFSC
file: index6_log_obs_vs_exp_NWFSC.png

Residuals of fit to index for NWFSC.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_NWFSC.png

Deviations for fit to index for NWFSC.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_NWFSC.png

Index data for ForeignAtSea. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index1_cpuedata_ForeignAtSea.png

Fit to index data for ForeignAtSea. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index2_cpuefit_ForeignAtSea.png

Observed vs. expected index values with smoother for ForeignAtSea
file: index3_obs_vs_exp_ForeignAtSea.png

Log index data for ForeignAtSea. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index4_logcpuedata_ForeignAtSea.png

Fit to log index data on log scale for ForeignAtSea. Lines indicate 95% uncertainty interval around index values based on the model assumption of lognormal error. Thicker lines (if present) indicate input uncertainty before addition of estimated additional uncertainty parameter.
file: index5_logcpuefit_ForeignAtSea.png

log(observed) vs. log(expected) index values with smoother for ForeignAtSea
file: index6_log_obs_vs_exp_ForeignAtSea.png

Residuals of fit to index for ForeignAtSea.
Values are (log(Obs) - log(Exp))/SE where SE is the total standard error including any estimated additional uncertainty.
file: index10_resids_SE_total_ForeignAtSea.png

Deviations for fit to index for ForeignAtSea.
Values are log(Obs) - log(Exp) and thus independent of index uncertainty.
file: index12_resids_SE_total_ForeignAtSea.png

Standardized indices overlaid. Each index is rescaled to have mean observation = 1.0.
file: index9_standcpueall.png